A weekly pattern can enter surveillance data in three different places. Start from a smooth underlying onset curve and switch each effect on to watch the observed reported series build up its weekly structure.
Each one belongs in a different part of the model
Real reporting rarely follows a single fixed delay. One of the most common departures is a day-of-week pattern, and it helps to keep three distinct causes apart because each acts on a different thing and each belongs in a different module of the model.
The figure below mirrors the simulation in the session: it starts from a smooth underlying onset curve and applies the three effects with the same weekly weights used there.
Grey line: the smooth underlying onsets we would like to recover. Bars: what we actually observe, reported by report day.
The three weekly ingredients behind the series above. The onset weekday effect scales how many onsets occur on each weekday, the mean delay by weekday reshapes how long weekend onsets take to report, and the report weekday effect scales reports on the day they land. Each panel is full colour when its toggle is on and greyed when off; weekends (Sat/Sun) are highlighted.
With no effects the reports are just a smoothed, delayed copy of the onset curve. Turn on the report-date effect alone and a clean weekly dip appears on the report axis. Add the two reference-date effects and the pattern gets richer: onsets themselves dip at weekends, and weekend onsets arrive later, smearing their weekly signature into the following week.
pt,d, which was a function of the delay alone.